Person

Position: Postdoc
e-mail: anup.halder@cent.uw.edu.pl
Room: 461 MiNI WUT, 03.64 CeNT UW
0000-0003-4825-1901

Institutions:
Faculty of Mathematics and Information Science, Warsaw University of Technology
Centre of New Technologies, University of Warsaw

Biographical note

Anup Kumar Halder is a Postdoctoral Fellow at Warsaw University of Technology in the Faculty of Mathematics and Information Science, Poland. He received his ME and PhD degrees in Computer Science and Engineering from Jadavpur University in 2014 and 2021, respectively. He was a recipient of the Visvesvaraya PhD Fellowship award from MeitY, GOI. His recent achievements cover qualitative and quantitative biological data analysis, proteomics, biomolecular interaction network analysis, pattern recognition, machine learning and deep learning in 3D genomics.

Publications in lab:

• Fichna J, Chiliński M, Halder A, Cięszczyk P, Plewczyński D, Żekanowski C, Janik P, (2024)
  Structural Variants and Implicated Processes Associated with Familial Tourette Syndrome.
  (Int J Mol Sci) [Pub Med ID: 30944313]
• Chiliński M, Halder A, Plewczyński D, (2023)
  Prediction of chromatin looping using deep hybrid learning (DHL)
  (Quant. Biol.) [Pub Med ID: ]
• Saha S, Chatterjee P, Halder A, Nasipuri M, Basu S, Plewczyński D, (2022)
  ML-DTD: Machine Learning-Based Drug Target Discovery for the Potential Treatment of COVID-19.
  (Vaccines (Basel)) [Pub Med ID: 21532099]
• Banik A, Podder S, Saha S, Chatterjee P, Halder A, Nasipuri M, Basu S, Plewczyński D, (2022)
  Rule-Based Pruning and In Silico Identification of Essential Proteins in Yeast PPIN.
  (Cells) [Pub Med ID: 33084874]
• Halder A, Bandyopadhyay S, Chatterjee P, Nasipuri M, Plewczyński D, Basu S, (2022)
  JUPPI: A Multi-Level Feature Based Method for PPI Prediction and a Refined Strategy for Performance Assessment.
  (IEEE/ACM Trans Comput Biol Bioinform) [Pub Med ID: 32750875]
• Sengupta K, Saha S, Halder A, Chatterjee P, Nasipuri M, Basu S, Plewczyński D, (2022)
  PFP-GO: Integrating protein sequence, domain and protein-protein interaction information for protein function prediction using ranked GO terms.
  (Front Genet) [Pub Med ID: 29477548]
• Halder A, Denkiewicz M, Sengupta K, Basu S, Plewczyński D, (2019)
  Aggregated network centrality shows non-random structure of genomic and proteomic networks.
  (Methods) [Pub Med ID: 31740366]
• Halder A, Chatterjee P, Nasipuri M, Plewczyński D, Basu S, (2019)
  3gClust: Human Protein Cluster Analysis.
  (IEEE/ACM Trans Comput Biol Bioinform) [Pub Med ID: 29993556]