Person

Position: PhD Student
e-mail: g.bokota@cent.uw.edu.pl
Phone: +48 22 55 43 657
Room: 3.66
0000-0002-5470-1676

Institutions:
Centre of New Technologies, University of Warsaw

Biographical note

Grzegorz Bokota interests are focused on developing algorithm for microscope image analyzing and massive parallel modeling of cell colony. In image analysis created algorithm are focused on nuclei segmentation and nuclei analysis of the interior of the nucleus.

Publications in lab:

• Krzyszton M, Sacharowski S, Manjunath V, Muter K, Bokota G, Wang C, Plewczyński D, Dobisova T, Swiezewski S, (2023)
  Dormancy heterogeneity among Arabidopsis thaliana seeds is linked to individual seed size.
  (Plant Commun) [Pub Med ID: 37828740]
• Montez M, Majchrowska M, Krzyszton M, Bokota G, Sacharowski S, Wrona M, Yatusevich R, Massana F, Plewczyński D, Swiezewski S, (2023)
  Promoter-pervasive transcription causes RNA polymerase II pausing to boost DOG1 expression in response to salt.
  (EMBO J) [Pub Med ID: 30498193]
• Grabowska A, Sas-Nowosielska H, Wojtas B, Holm-Kaczmarek D, Januszewicz E, Yushkevich Y, Czaban I, Trzaskoma P, Krawczyk K, Gielniewski B, Martin-Gonzalez A, Filipkowski R, Olszynski K, Bernas T, Szczepankiewicz A, Śliwińska M, Kanhema T, Bramham C, Bokota G, Plewczyński D, Wilczynski G, Magalska A, (2022)
  Activation-induced chromatin reorganization in neurons depends on HDAC1 activity.
  (Cell Rep) [Pub Med ID: 35172152]
• Bokota G, Sroka J, Basu S, Das N, Trzaskoma P, Yushkevich Y, Grabowska A, Magalska A, Plewczyński D, (2021)
  PartSeg: a tool for quantitative feature extraction from 3D microscopy images for dummies.
  (BMC Bioinformatics) [Pub Med ID: 29723661]
• Trzaskoma P, Ruszczycki B, Lee B, Pels K, Krawczyk K, Bokota G, Szczepankiewicz A, Aaron J, Walczak A, Śliwińska M, Magalska A, Kadlof M, Wolny A, Parteka-Tojek Z, Arabasz S, Kiss-Arabasz M, Plewczyński D, Ruan Y, Wilczynski G, (2020)
  Ultrastructural visualization of 3D chromatin folding using volume electron microscopy and DNA in situ hybridization.
  (Nat Commun) [Pub Med ID: 25768903]
• Urban P, Rezaei Tabar V, Denkiewicz M, Bokota G, Das N, Basu S, Plewczyński D, (2020)
  The Mixture of Autoregressive Hidden Markov Models of Morphology for Dentritic Spines During Activation Process.
  (J. Comput. Biol.) [Pub Med ID: 32175768]
• Urban P, Rezaei V, Bokota G, Denkiewicz M, Basu S, Plewczyński D, (2019)
  Dendritic Spines Taxonomy: The Functional and Structural Classification • Time-Dependent Probabilistic Model of Neuronal Activation.
  (J. Comput. Biol.) [Pub Med ID: 28158194]
• Ruszczycki B, Pels K, Walczak A, Zamłyńska K, Such M, Szczepankiewicz A, Hall M, Magalska A, Magnowska M, Wolny A, Bokota G, Basu S, Pal A, Plewczyński D, Wilczynski G, (2019)
  Three-Dimensional Segmentation and Reconstruction of Neuronal Nuclei in Confocal Microscopic Images.
  (Front Neuroanat) [Pub Med ID: 27412086]
• Bokota G, Magnowska M, Kuśmierczyk T, Łukasik M, Roszkowska M, Plewczyński D, (2016)
  Computational Approach to Dendritic Spine Taxonomy and Shape Transition Analysis.
  (Front Comput Neurosci) [Pub Med ID: 28066226]